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COMMON PART


Project Number22-24-00421

Project titleEndophytic bacteria Herbaspirillum spp. as a basis for the creation of biocontrol preparations increasing productivity of agronomic crops

Project LeadVelichko Natalya

AffiliationInstitute of Biochemistry and Physiology of Plants and Microorganisms Russian Academy of Sciences,

Implementation period 2022 - 2023 

Research area 04 - BIOLOGY AND LIFE SCIENCES, 04-203 - General biochemistry

KeywordsSymbiosis, Herbaspirillum, plant-microbial interactions, plant responses, lipopolysaccharide, O-specific polysaccharide, structure


 

PROJECT CONTENT


Annotation
The project is aimed at studying the fundamental issues of the interaction of higher plants with soil prokaryotes. The main emphasis will be placed on the systematic study of the peculiarities of the formation of associations with beneficial microflora and plant responses in integrated systems. Traditionally, the attention of researchers is attracted by the search for environmentally friendly and energy-saving approaches for the development of sustainable agriculture. The increasing attention of scientists is focused on the creation of biological products based on microorganisms that stimulate the growth and productivity of plants. Of particular interest among them are endophytic bacteria capable of living mutually inside plant tissues, which allows them, in comparison with other microorganisms, to be less dependent on external environmental factors, exhibit a set of economically useful properties and activate the defense systems of plants, which is adequate and ecologically a safe alternative to agrochemicals. The activation of plant defense systems is mediated by the production of physiologically active compounds produced by microorganisms. One of these elicitors are lipolysaccharides (LPS) of the outer membrane of the cell wall of gram-negative bacteria. At the moment, the phenomenon of mediated regulation of the host immune response has been demonstrated for a wide range of pathogens, while work on the systemic study of the mechanisms of relationships in plant-endophytic systems and the role of LPS of endophytic microorganisms in the induction of defense reactions in plants are presented fragmentarily, which is one of the main reasons. hindering the development of a more effective plant protection system. The genetic potential of the universal bacteria of the genus Herbaspirillum makes it possible to use them not only in the composition of biological products that increase growth and productivity, but also as a model object for studying the mechanisms of mutualistic relationships of higher organisms with endosymbionts. The study of the nature of the distribution of herbapirillum cells in planta, the mechanisms of the manifestation of plant responses in the community with endophytic representatives of these bacteria to the effect of environmental stress factors, as well as the structural features of membrane polysaccharides and their activity against plants is undoubtedly an urgent task. The fundamental basis for solving this problem lies in understanding the principles of the formation and functioning of a specific plant-microbial system. In the course of the project, a characteristic of the process of systemic colonization of different species of cultivated plants will be given, the nature of their response to inoculation by endophytic representatives of Herbaspirillum spp to stress environmental factors will be determined. New, fundamentally important information will be obtained on the structural features of the LPS of poorly studied in this respect gram-negative bacteria of the genus Herbaspirillum. It is known that variations in the structure of LPS can be associated with various molecular mechanisms of activation of the immunological defense of multicellular organisms against infectious agents and their recognition. The most variable part of the LPS molecule is the O-specific polysaccharide (OPS). With the use of modern physicochemical methods of analysis, including MALDI TOF mass spectrometry and NMR spectroscopy, the structure of the repeating unit of the OPS, previously not studied in this regard, the Herbaspirillum strain, will be established. We will study the participation of Herbaspirillum LPS isolated and characterized during the implementation of this project, as well as in our earlier studies, in the induction of a protective response in plants. A comprehensive study of a specific symbiotic system using modern research methods will allow obtaining unique fundamental knowledge and developing biological approaches based on plant-microbial interactions to improve the adaptation of crops to stress factors of biotic and abiotic nature, which is important for establishing biological balance in agrocenoses. The information obtained in the course of the project on the structure and biological activity of LPSs directly involved in the formation of associations of Herbaspirillum with plants can add priority information to information databases for this group of bacteria and expand the fundamental support of the existing ideas about the composition and structure of surface carbohydrate-containing polymers of soil gram-negative bacteria, and will also contribute to the understanding of the processes of formation of associations and draw some conclusions about the participation of LPS of endophytic bacteria in the induction of defense reactions in plants.

Expected results
The implementation of the proposed project will allow obtaining experimental material that will expand the understanding of the principles of the formation and functioning of a specific plant-microbial system. The responses of plants in the community with endophytic representatives of bacteria of the genus Herbaspirillum to stress factors of the environment will be identified, and a qualitative and quantitative assessment of the localization of the studied microorganisms in the tissues of the host plant will be carried out. At the same time, the features of systemic colonization of herbaspirillum inside plant tissues will be described in dynamics in vitro and in vivo. Using recombinant gfp-labeled derivatives, the ability of two promising species of herbaspirillum, previously not studied in this respect, to exist endophytically in the tissues of various cultivated plants, will be determined. An assessment will be made of the influence of the most promising representative of the Herbaspirillum strain investigated during this project on the resistance of wheat plants to pathogenic fungi during the growing season. During the implementation of the project, fundamental knowledge will be obtained about the structures of herbaspirillum lipopolysaccharides and their physiological activity in relation to plants. The structure of the repeating unit of the O-specific polysaccharide of the type strain, previously not studied in this respect, will be established. The study of the influence of structurally different lipopolysaccharides of herbapirillum, which we characterized both during this project and earlier, on the induction of responses of various types of cultivated plants: the synthesis of reactive oxygen species, nitric oxide, salicylic and jasmonic acids will be carried out. The dynamics of changes in the concentration of these compounds in seedlings of cultivated plants under the influence of the selected LPS preparations will be determined. The significance of the results that are planned to be obtained during the work on the project is determined by the need to develop effective and environmentally friendly drugs based on useful forms of prokaryotes to create environmentally safe, highly productive and competitive biological products in adaptive agriculture that can activate the defense systems of plants.


 

REPORTS


Annotation of the results obtained in 2023
As a result of the work done, a high antagonistic potential of endophytic representatives of the genus Herbaspirillum against field strains of filamentous fungi of the genus Fusarium was noted. The microorganisms chosen for the study almost completely suppressed the growth of one of the most harmful species, F. сulmorum. Analysis of the data obtained suggests that the observed effects are mediated by the antifungal activity of the studied Herbaspirillum spp. strains, which is least associated with competition for nutritional resources. An analysis of the resistance of wheat plants to pathogenic fungi during the growing season showed a decrease in the incidence of wheat root rot caused by F. culmorum when inoculated with H. lusitanum P6 12T and H. seropedicae Z67T. In a community with the studied endophytes, cultivated plants have increased resistance to stress caused by various factors, such as soil drought and sodium-chloride salinity. We assume that one of the general mechanisms of the protective effect of Herbaspirillum under the influence of the studied stress factors is a decrease in the amount of MDA in plant tissues as an integral indicator of the level of lipid peroxidation. The discovery of important economically valuable properties in the studied bacterial strains, such as antagonism towards phytopathogenic fungi, growth stimulation and induction of resistance to biogenic stress, is of interest from the point of view of further research and the creation on their basis of laboratory samples of microbial preparations with their possible subsequent implementation in practice crop production Activation of plant defense systems is mediated by the production of physiologically active compounds produced by microorganisms. One of these elicitors are lipopolysaccharides (LPS) in the outer membrane of the cell wall of gram-negative bacteria and O-specific polysaccharides. The subtle mechanisms of the interaction between herbaspirillum and macroorganisms have not been sufficiently studied; their understanding will be difficult without information about the composition and structures of biopolymers directly involved in these processes. During the project, LPS from growth-promoting bacteria of the genus Herbaspirillum were isolated, purified and characterized. Using chemical, physicochemical and instrumental methods of analysis, incl. GLC, NMR spectroscopy and MALDI MS obtained fundamental data on the structural features of Herbaspirillum LPS. The structure of lipid A of lipopolysaccharide of H. lusitanum P6-12T has been established. Based on the results of the second year of the project, articles were prepared and published in publications indexed in the citation systems RSCI, Web of Science and Scopus. The project manager and implementers presented the data obtained at All-Russian and international conferences.

 

Publications

1. N.K. Kondurina, N.S. Velichko Ответные реакции Triticum aestivum l. на обработку липополисахаридом эндофитных видов гербаспирилл ИССЛЕДОВАНИЯ МОЛОДЫХ УЧЕНЫХ В БИОЛОГИИ И ЭКОЛОГИИ - 2023 Сборник научных статей IV Международной научной конференции молодых ученых. Саратов, 2023 Издательство: Общество с ограниченной ответственностью "Амирит" (Саратов), С. 56-57. (year - 2023)

2. Velichko N.S., Kokoulin M.S., Dmitrenok P.S., Grinev V.S., Kuchur P.D., Komissarov A.S., Fedonenko Y.P. Lipopolysaccharides of Herbaspirillum species and their relevance for bacterium–host interactions International Journal of Biological Macromolecules, - (year - 2024)

3. Velichko N.S., Kondyurina N.K.,Fedonenko Y.P. Антагонистическая активность некоторых представителей рода Herbaspirillum в отношении фитопатогенных микромицетов ИЗВЕСТИЯ САРАТОВСКОГО УНИВЕРСИТЕТА. НОВАЯ СЕРИЯ. СЕРИЯ: ХИМИЯ. БИОЛОГИЯ. ЭКОЛОГИЯ, Т. 23, № 3, 2023, 337-344 стр. (year - 2023) https://doi.org/10.18500/1816-9775-2023-23-3-337-344


Annotation of the results obtained in 2022
Fluorescently stained strains of H. seropedicae Z78, H. seropedicae Z67, H. lusitanum Р6 12, H. frisingense JCM 21445, H. chlorophenolicum CPW301 were obtained using vector constructs, and their suitability for experiments in vivo and in vitro was shown. Using the gfp gene reporter, we visualized the colonization of seedlings of monocot plants - wheat Triticum aestivum L. and dicotyledonous bean plants - Phaseolus vulgaris L. by two species of herbaspirilla (H. lusitanum P6-12 and H. chlorophenolicum CPW301). For the first time for these species, the ability to independently penetrate into the roots of a specific and nonspecific host through the cells of the root cap was shown, and once inside the roots, systemically infect adjacent tissues. Colonization has been shown to improve early growth and productivity of monocots and dicots in vitro. Lipopolysaccharides of endophytic plant growth-stimulating bacteria of the genus Herbaspirillum, including three previously unstudied species (H. seropedicae Z67, H. lusitanum P6-12, H. chlorophenolicum CPW301), were isolated, purified, and characterized. A study was made of the effect of structurally different LPS on the induction of responses at the early stage of development of seedlings of monocot plants - wheat Triticum aestivum L. and dicotyledon bean plants - Phaseolus vulgaris L. The presence of oxidative enzyme systems was noted, which determine the ability of herbaspirilla to destroy ecotoxicants, in particular alkyl sulfates. The ability of the strains selected for the study to degrade sodium dodecylsulfate sodium as one of the toxic organopolutants included in the composition of common disinfectants, detergents and cleaners is given. The effect of various physicochemical parameters of bacterial cultivation on the process of biodegradation of this compound was analyzed, and the metabolic activity of bacteria in the presence of various concentrations of ecotoxicant was studied. A sensor system is proposed for the indication of sodium dodecyl sulfate in aqueous solutions in a short time without the need for pre-treatment of the sample (https://ru.rt.com/lrct). The relatively high optimum temperature for growth on SDS demonstrated by representatives of the genus Herbaspirillum is suitable for their use in bioremediation of soil areas contaminated with SDS.

 

Publications

1. Velichko N.S., Bagavova A.R., Burygin G.L., Baymiev A.Kh., Pylaev T.E., Fedonenko Y.P. In situ localization and penetration route of an endophytic bacteria into roots of wheat and the common bean Rhizosphere, 23C (2022) 100567 (year - 2022) https://doi.org/10.1016/j.rhisph.2022.100567

2. Velichko N.S., Guliy O.I., Kanevsky M.V., Kupryashina M.A., Fedonenko Yu.P. Whole-cell electric sensor for determination of sodium dodecyl sulfate World Journal of Microbiology and Biotechnology, 38:118 (2022) (year - 2022) https://doi.org/10.1007/s11274-022-03309-1

3. - Высокоточный мониторинг: российские учёные создали биосенсор для оценки качества воды RT, 16 июня 2022 (year - )